Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.
Identifieur interne : 002F76 ( Main/Exploration ); précédent : 002F75; suivant : 002F77Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.
Auteurs : Antje Rohde [Belgique] ; Véronique Storme ; Véronique Jorge ; Muriel Gaudet ; Nicola Vitacolonna ; Francesco Fabbrini ; Tom Ruttink ; Giusi Zaina ; Nicolas Marron ; Sophie Dillen ; Marijke Steenackers ; Maurizio Sabatti ; Michele Morgante ; Wout Boerjan ; Catherine BastienSource :
- The New phytologist [ 1469-8137 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Populus.
- génétique : Populus.
- Analyse en composantes principales, Génome végétal, Hybridation génétique, Locus de caractère quantitatif, Phénotype, Saisons, Variation génétique.
English descriptors
- KwdEn :
- MESH :
- genetics : Populus.
- growth & development : Populus.
- Genetic Variation, Genome, Plant, Hybridization, Genetic, Phenotype, Principal Component Analysis, Quantitative Trait Loci, Seasons.
Abstract
• The seasonal timing of growth events is crucial to tree distribution and conservation. The seasonal growth cycle is strongly adapted to the local climate that is changing because of global warming. We studied bud set as one cornerstone of the seasonal growth cycle in an integrative approach. • Bud set was dissected at the phenotypic level into several components, and phenotypic components with most genetic variation were identified. While phenotypic variation resided in the timing of growth cessation, and even so more in the duration from growth cessation to bud set, the timing of growth cessation had a stronger genetic component in both natural and hybrid populations. • Quantitative trait loci (QTL) were identified for the most discriminative phenotypic bud-set components across four poplar pedigrees. The QTL from different pedigrees were recurrently detected in six regions of the poplar genome. • These regions of 1.83-4.25 Mbp in size, containing between 202 and 394 genes, form the basis for further molecular-genetic dissection of bud set.
DOI: 10.1111/j.1469-8137.2010.03469.x
PubMed: 21039557
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.</title><author><name sortKey="Rohde, Antje" sort="Rohde, Antje" uniqKey="Rohde A" first="Antje" last="Rohde">Antje Rohde</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), Gent, Belgium. antje.rohde@ilvo.vlaanderen.be</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), Gent</wicri:regionArea><wicri:noRegion>Gent</wicri:noRegion></affiliation></author><author><name sortKey="Storme, Veronique" sort="Storme, Veronique" uniqKey="Storme V" first="Véronique" last="Storme">Véronique Storme</name></author><author><name sortKey="Jorge, Veronique" sort="Jorge, Veronique" uniqKey="Jorge V" first="Véronique" last="Jorge">Véronique Jorge</name></author><author><name sortKey="Gaudet, Muriel" sort="Gaudet, Muriel" uniqKey="Gaudet M" first="Muriel" last="Gaudet">Muriel Gaudet</name></author><author><name sortKey="Vitacolonna, Nicola" sort="Vitacolonna, Nicola" uniqKey="Vitacolonna N" first="Nicola" last="Vitacolonna">Nicola Vitacolonna</name></author><author><name sortKey="Fabbrini, Francesco" sort="Fabbrini, Francesco" uniqKey="Fabbrini F" first="Francesco" last="Fabbrini">Francesco Fabbrini</name></author><author><name sortKey="Ruttink, Tom" sort="Ruttink, Tom" uniqKey="Ruttink T" first="Tom" last="Ruttink">Tom Ruttink</name></author><author><name sortKey="Zaina, Giusi" sort="Zaina, Giusi" uniqKey="Zaina G" first="Giusi" last="Zaina">Giusi Zaina</name></author><author><name sortKey="Marron, Nicolas" sort="Marron, Nicolas" uniqKey="Marron N" first="Nicolas" last="Marron">Nicolas Marron</name></author><author><name sortKey="Dillen, Sophie" sort="Dillen, Sophie" uniqKey="Dillen S" first="Sophie" last="Dillen">Sophie Dillen</name></author><author><name sortKey="Steenackers, Marijke" sort="Steenackers, Marijke" uniqKey="Steenackers M" first="Marijke" last="Steenackers">Marijke Steenackers</name></author><author><name sortKey="Sabatti, Maurizio" sort="Sabatti, Maurizio" uniqKey="Sabatti M" first="Maurizio" last="Sabatti">Maurizio Sabatti</name></author><author><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name></author><author><name sortKey="Boerjan, Wout" sort="Boerjan, Wout" uniqKey="Boerjan W" first="Wout" last="Boerjan">Wout Boerjan</name></author><author><name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="RBID">pubmed:21039557</idno><idno type="pmid">21039557</idno><idno type="doi">10.1111/j.1469-8137.2010.03469.x</idno><idno type="wicri:Area/Main/Corpus">003021</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003021</idno><idno type="wicri:Area/Main/Curation">003021</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003021</idno><idno type="wicri:Area/Main/Exploration">003021</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.</title><author><name sortKey="Rohde, Antje" sort="Rohde, Antje" uniqKey="Rohde A" first="Antje" last="Rohde">Antje Rohde</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), Gent, Belgium. antje.rohde@ilvo.vlaanderen.be</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), Gent</wicri:regionArea><wicri:noRegion>Gent</wicri:noRegion></affiliation></author><author><name sortKey="Storme, Veronique" sort="Storme, Veronique" uniqKey="Storme V" first="Véronique" last="Storme">Véronique Storme</name></author><author><name sortKey="Jorge, Veronique" sort="Jorge, Veronique" uniqKey="Jorge V" first="Véronique" last="Jorge">Véronique Jorge</name></author><author><name sortKey="Gaudet, Muriel" sort="Gaudet, Muriel" uniqKey="Gaudet M" first="Muriel" last="Gaudet">Muriel Gaudet</name></author><author><name sortKey="Vitacolonna, Nicola" sort="Vitacolonna, Nicola" uniqKey="Vitacolonna N" first="Nicola" last="Vitacolonna">Nicola Vitacolonna</name></author><author><name sortKey="Fabbrini, Francesco" sort="Fabbrini, Francesco" uniqKey="Fabbrini F" first="Francesco" last="Fabbrini">Francesco Fabbrini</name></author><author><name sortKey="Ruttink, Tom" sort="Ruttink, Tom" uniqKey="Ruttink T" first="Tom" last="Ruttink">Tom Ruttink</name></author><author><name sortKey="Zaina, Giusi" sort="Zaina, Giusi" uniqKey="Zaina G" first="Giusi" last="Zaina">Giusi Zaina</name></author><author><name sortKey="Marron, Nicolas" sort="Marron, Nicolas" uniqKey="Marron N" first="Nicolas" last="Marron">Nicolas Marron</name></author><author><name sortKey="Dillen, Sophie" sort="Dillen, Sophie" uniqKey="Dillen S" first="Sophie" last="Dillen">Sophie Dillen</name></author><author><name sortKey="Steenackers, Marijke" sort="Steenackers, Marijke" uniqKey="Steenackers M" first="Marijke" last="Steenackers">Marijke Steenackers</name></author><author><name sortKey="Sabatti, Maurizio" sort="Sabatti, Maurizio" uniqKey="Sabatti M" first="Maurizio" last="Sabatti">Maurizio Sabatti</name></author><author><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name></author><author><name sortKey="Boerjan, Wout" sort="Boerjan, Wout" uniqKey="Boerjan W" first="Wout" last="Boerjan">Wout Boerjan</name></author><author><name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genetic Variation (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Phenotype (MeSH)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Principal Component Analysis (MeSH)</term><term>Quantitative Trait Loci (MeSH)</term><term>Seasons (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse en composantes principales (MeSH)</term><term>Génome végétal (MeSH)</term><term>Hybridation génétique (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Phénotype (MeSH)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Saisons (MeSH)</term><term>Variation génétique (MeSH)</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Variation</term><term>Genome, Plant</term><term>Hybridization, Genetic</term><term>Phenotype</term><term>Principal Component Analysis</term><term>Quantitative Trait Loci</term><term>Seasons</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse en composantes principales</term><term>Génome végétal</term><term>Hybridation génétique</term><term>Locus de caractère quantitatif</term><term>Phénotype</term><term>Saisons</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">• The seasonal timing of growth events is crucial to tree distribution and conservation. The seasonal growth cycle is strongly adapted to the local climate that is changing because of global warming. We studied bud set as one cornerstone of the seasonal growth cycle in an integrative approach. • Bud set was dissected at the phenotypic level into several components, and phenotypic components with most genetic variation were identified. While phenotypic variation resided in the timing of growth cessation, and even so more in the duration from growth cessation to bud set, the timing of growth cessation had a stronger genetic component in both natural and hybrid populations. • Quantitative trait loci (QTL) were identified for the most discriminative phenotypic bud-set components across four poplar pedigrees. The QTL from different pedigrees were recurrently detected in six regions of the poplar genome. • These regions of 1.83-4.25 Mbp in size, containing between 202 and 394 genes, form the basis for further molecular-genetic dissection of bud set.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21039557</PMID><DateCompleted><Year>2011</Year><Month>04</Month><Day>06</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>189</Volume><Issue>1</Issue><PubDate><Year>2011</Year><Month>Jan</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.</ArticleTitle><Pagination><MedlinePgn>106-21</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1469-8137.2010.03469.x</ELocationID><Abstract><AbstractText>• The seasonal timing of growth events is crucial to tree distribution and conservation. The seasonal growth cycle is strongly adapted to the local climate that is changing because of global warming. We studied bud set as one cornerstone of the seasonal growth cycle in an integrative approach. • Bud set was dissected at the phenotypic level into several components, and phenotypic components with most genetic variation were identified. While phenotypic variation resided in the timing of growth cessation, and even so more in the duration from growth cessation to bud set, the timing of growth cessation had a stronger genetic component in both natural and hybrid populations. • Quantitative trait loci (QTL) were identified for the most discriminative phenotypic bud-set components across four poplar pedigrees. The QTL from different pedigrees were recurrently detected in six regions of the poplar genome. • These regions of 1.83-4.25 Mbp in size, containing between 202 and 394 genes, form the basis for further molecular-genetic dissection of bud set.</AbstractText><CopyrightInformation>© The Authors (2010). Journal compilation © New Phytologist Trust (2010).</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rohde</LastName><ForeName>Antje</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), Gent, Belgium. antje.rohde@ilvo.vlaanderen.be</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Storme</LastName><ForeName>Véronique</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Jorge</LastName><ForeName>Véronique</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Gaudet</LastName><ForeName>Muriel</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Vitacolonna</LastName><ForeName>Nicola</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Fabbrini</LastName><ForeName>Francesco</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Ruttink</LastName><ForeName>Tom</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Zaina</LastName><ForeName>Giusi</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Marron</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Dillen</LastName><ForeName>Sophie</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Steenackers</LastName><ForeName>Marijke</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Sabatti</LastName><ForeName>Maurizio</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Morgante</LastName><ForeName>Michele</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Boerjan</LastName><ForeName>Wout</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Bastien</LastName><ForeName>Catherine</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>10</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="CommentIn"><RefSource>New Phytol. 2011 Jan;189(1):3-5</RefSource><PMID Version="1">21166094</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="N">Hybridization, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D025341" MajorTopicYN="N">Principal Component Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>11</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>11</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>4</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21039557</ArticleId><ArticleId IdType="doi">10.1111/j.1469-8137.2010.03469.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Belgique</li></country></list><tree><noCountry><name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name><name sortKey="Boerjan, Wout" sort="Boerjan, Wout" uniqKey="Boerjan W" first="Wout" last="Boerjan">Wout Boerjan</name><name sortKey="Dillen, Sophie" sort="Dillen, Sophie" uniqKey="Dillen S" first="Sophie" last="Dillen">Sophie Dillen</name><name sortKey="Fabbrini, Francesco" sort="Fabbrini, Francesco" uniqKey="Fabbrini F" first="Francesco" last="Fabbrini">Francesco Fabbrini</name><name sortKey="Gaudet, Muriel" sort="Gaudet, Muriel" uniqKey="Gaudet M" first="Muriel" last="Gaudet">Muriel Gaudet</name><name sortKey="Jorge, Veronique" sort="Jorge, Veronique" uniqKey="Jorge V" first="Véronique" last="Jorge">Véronique Jorge</name><name sortKey="Marron, Nicolas" sort="Marron, Nicolas" uniqKey="Marron N" first="Nicolas" last="Marron">Nicolas Marron</name><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name><name sortKey="Ruttink, Tom" sort="Ruttink, Tom" uniqKey="Ruttink T" first="Tom" last="Ruttink">Tom Ruttink</name><name sortKey="Sabatti, Maurizio" sort="Sabatti, Maurizio" uniqKey="Sabatti M" first="Maurizio" last="Sabatti">Maurizio Sabatti</name><name sortKey="Steenackers, Marijke" sort="Steenackers, Marijke" uniqKey="Steenackers M" first="Marijke" last="Steenackers">Marijke Steenackers</name><name sortKey="Storme, Veronique" sort="Storme, Veronique" uniqKey="Storme V" first="Véronique" last="Storme">Véronique Storme</name><name sortKey="Vitacolonna, Nicola" sort="Vitacolonna, Nicola" uniqKey="Vitacolonna N" first="Nicola" last="Vitacolonna">Nicola Vitacolonna</name><name sortKey="Zaina, Giusi" sort="Zaina, Giusi" uniqKey="Zaina G" first="Giusi" last="Zaina">Giusi Zaina</name></noCountry><country name="Belgique"><noRegion><name sortKey="Rohde, Antje" sort="Rohde, Antje" uniqKey="Rohde A" first="Antje" last="Rohde">Antje Rohde</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002F76 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002F76 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:21039557
|texte= Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:21039557" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |